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Unity
Unity
About
News
Events
Docs
Contact Us
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Documentation

  • Requesting An Account
  • Get Started
    • Quick Start
    • Common Terms
    • HPC Resources
    • Theory of HPC
      • Overview of threads, cores, and sockets in Slurm for HPC workflows
    • Git Guide
  • Connecting to Unity
    • SSH
    • Unity OnDemand
    • Connecting to Desktop VS Code
  • Get Help
    • Frequently Asked Questions
    • How to Ask for Help
    • Troubleshooting
  • Cluster Specifications
    • Node List
    • Partition List
      • Gypsum
    • Storage
    • Node Features (Constraints)
      • NVLink and NVSwitch
    • GPU Summary List
  • Managing Files
    • Command Line Interface (CLI)
    • Disk Quotas
    • FileZilla
    • Globus
    • Scratch: HPC Workspace
    • Unity OnDemand File Browser
  • Submitting Jobs
    • Batch Jobs
      • Array Batch Jobs
      • Large Job Counts
      • Monitor a batch job
    • Helper Scripts
    • Interactive CLI Jobs
    • Unity OnDemand
    • Message Passing Interface (MPI)
    • Slurm cheat sheet
  • Software Management
    • Building Software from Scratch
    • Conda
    • Modules
      • Module Usage
    • Renv
    • Unity OnDemand
      • JupyterLab OnDemand
    • Venv
  • Tools & Software
    • ColabFold
    • R
      • R Parallelization
    • Unity GPUs
  • Datasets
    • AI and ML
      • AlpacaFarm
      • audioset
      • biomed_clip
      • blip_2
      • blip_2
      • coco
      • Code Llama
      • DeepAccident
      • DeepSeek
      • DINO v2
      • epic-kitchens
      • florence
      • gemma
      • gpt
      • gte-Qwen2
      • ibm-granite
      • Idefics2
      • Imagenet 1K
      • inaturalist
      • infly
      • instruct-blip
      • intfloat
      • LAION
      • linq
      • llama
      • Llama2
      • llama3
      • llama4
      • Llava_OneVision
      • Lumina
      • mixtral
      • msmarco
      • natural-questions
      • objaverse
      • openai-whisper
      • pythia
      • qwen
      • R1-1776
      • rag-sequence-nq
      • red-pajama-v2
      • s1-32B
      • satlas_pretrain
      • scalabilityai
      • SlimPajama
      • t5
      • Tulu
      • V2X
      • video-MAE
      • videoMAE-v2
      • vit
      • wildchat
    • Bioinformatics
      • AlphaFold3 Databases
      • BFD/MGnify
      • Big Fantastic Database
      • checkm
      • ColabFoldDB
      • dfam
      • EggNOG
      • EggNOG
      • gmap
      • GMAP-GSNAP database (human genome)
      • GTDB
      • igenomes
      • Kraken2
      • MGnify
      • NCBI BLAST databases
      • NCBI RefSeq database
      • NCBI RefSeq database
      • Parameters of Evolutionary Scale Modeling (ESM) models
      • params
      • PDB70
      • PDB70 for ColabFold
      • PINDER
      • PLINDER
      • Protein Data Bank
      • Protein Data Bank database in mmCIF format
      • Protein Data Bank database in SEQRES records
      • Tara Oceans 18S amplicon
      • Tara Oceans MATOU gene catalog
      • Tara Oceans MGT transcriptomes
      • Uniclust30
      • UniProtKB
      • UniRef100
      • UniRef30
      • UniRef90
      • Updated databases for ColabFold
    • Using HuggingFace Datasets

Documentation

  • Requesting An Account
  • Get Started
    • Quick Start
    • Common Terms
    • HPC Resources
    • Theory of HPC
      • Overview of threads, cores, and sockets in Slurm for HPC workflows
    • Git Guide
  • Connecting to Unity
    • SSH
    • Unity OnDemand
    • Connecting to Desktop VS Code
  • Get Help
    • Frequently Asked Questions
    • How to Ask for Help
    • Troubleshooting
  • Cluster Specifications
    • Node List
    • Partition List
      • Gypsum
    • Storage
    • Node Features (Constraints)
      • NVLink and NVSwitch
    • GPU Summary List
  • Managing Files
    • Command Line Interface (CLI)
    • Disk Quotas
    • FileZilla
    • Globus
    • Scratch: HPC Workspace
    • Unity OnDemand File Browser
  • Submitting Jobs
    • Batch Jobs
      • Array Batch Jobs
      • Large Job Counts
      • Monitor a batch job
    • Helper Scripts
    • Interactive CLI Jobs
    • Unity OnDemand
    • Message Passing Interface (MPI)
    • Slurm cheat sheet
  • Software Management
    • Building Software from Scratch
    • Conda
    • Modules
      • Module Usage
    • Renv
    • Unity OnDemand
      • JupyterLab OnDemand
    • Venv
  • Tools & Software
    • ColabFold
    • R
      • R Parallelization
    • Unity GPUs
  • Datasets
    • AI and ML
      • AlpacaFarm
      • audioset
      • biomed_clip
      • blip_2
      • blip_2
      • coco
      • Code Llama
      • DeepAccident
      • DeepSeek
      • DINO v2
      • epic-kitchens
      • florence
      • gemma
      • gpt
      • gte-Qwen2
      • ibm-granite
      • Idefics2
      • Imagenet 1K
      • inaturalist
      • infly
      • instruct-blip
      • intfloat
      • LAION
      • linq
      • llama
      • Llama2
      • llama3
      • llama4
      • Llava_OneVision
      • Lumina
      • mixtral
      • msmarco
      • natural-questions
      • objaverse
      • openai-whisper
      • pythia
      • qwen
      • R1-1776
      • rag-sequence-nq
      • red-pajama-v2
      • s1-32B
      • satlas_pretrain
      • scalabilityai
      • SlimPajama
      • t5
      • Tulu
      • V2X
      • video-MAE
      • videoMAE-v2
      • vit
      • wildchat
    • Bioinformatics
      • AlphaFold3 Databases
      • BFD/MGnify
      • Big Fantastic Database
      • checkm
      • ColabFoldDB
      • dfam
      • EggNOG
      • EggNOG
      • gmap
      • GMAP-GSNAP database (human genome)
      • GTDB
      • igenomes
      • Kraken2
      • MGnify
      • NCBI BLAST databases
      • NCBI RefSeq database
      • NCBI RefSeq database
      • Parameters of Evolutionary Scale Modeling (ESM) models
      • params
      • PDB70
      • PDB70 for ColabFold
      • PINDER
      • PLINDER
      • Protein Data Bank
      • Protein Data Bank database in mmCIF format
      • Protein Data Bank database in SEQRES records
      • Tara Oceans 18S amplicon
      • Tara Oceans MATOU gene catalog
      • Tara Oceans MGT transcriptomes
      • Uniclust30
      • UniProtKB
      • UniRef100
      • UniRef30
      • UniRef90
      • Updated databases for ColabFold
    • Using HuggingFace Datasets

On this page

  • Connect to Unity
    • How do I connect to the Unity platform and begin using it?
  • Software and Tools
    • Where can I find software to use on Unity?
    • I’m looking for xyz software; could you install it?
    • Can I run containers on Unity?
  • Storage and Hardware
    • How much storage do I get on Unity and is it backed up?
    • How can I extend the 30-day scratch workspace? Mine seems to have expired, and I can’t access it.
    • I’m a PI, and I would like to purchase hardware to buy-in to Unity.
  • Job Management
    • I’m part of multiple PI groups; how can I make sure I’m doing my work under a certain group and not a different one?
    • How can I check the resource use of my job while it’s running?
  1. Unity
  2. Documentation
  3. Get Help
  4. Frequently Asked Questions

Frequently Asked Questions

If you have general questions that are not included in this page or in the rest of the documentation, please email hpc@umass.edu. To troubleshoot more specific errors and issues, see Troubleshooting.

Connect to Unity

How do I connect to the Unity platform and begin using it?

There are multiple ways to connect to Unity:

  • Unity OnDemand is the simplest and most convenient method of connecting because it allows you to login through your browser.
  • SSH Connection is the most traditional method of connecting to Unity, especially for experienced Command Line Interface (CLI) users. SSH connection allows you to connect to Unity in your terminal.
  • Visual Studio Code Desktop allows you to connect to Unity using the Remote-SSH feature, which is useful for users that prefer to use VS Code as their editor.
  • PuTTY is a convenient way to connect to Unity that is available to Windows users. See the SSH Connection guide for instructions on how to connect with PuTTY.

Software and Tools

Where can I find software to use on Unity?

Most of our software is package installed and is available by default.

Unity OnDemand provides JupyterLab, Matlab, RStudio, Mathematica, and a XFCE, a general purpose interactive desktop environment.

Non standard and version specific software are available as modules.

  • To print all available modules, use the command module av.
  • To filter the available modules, use module av <name>.
  • To load a module and gain access to its binaries (executables), use module load <name>.

To install additional software, see our guide on conda environments.

I’m looking for xyz software; could you install it?

Most software that is requested is free for use and can be installed for you. To request software, please fill out our software request form. If the software you want is licensed, we may be able to help since the campus often has site-wide licenses for many applications.

Can I run containers on Unity?

Yes! We support Apptainer (formerly Singularity) containers, which are fully compatible with Docker images. Run module load apptainer/latest to access it.

Storage and Hardware

How much storage do I get on Unity and is it backed up?

Refer to our storage documentation. We do not provide backup solutions by default. We take snapshots of /home/ and /work/ every day at 1AM, but delete them after two days.

How can I extend the 30-day scratch workspace? Mine seems to have expired, and I can’t access it.

For information on how to extend a workspace, see the HPC Workspace documentation.

I’m a PI, and I would like to purchase hardware to buy-in to Unity.

Great! Send us an email and we’ll be happy to help. We are very flexible when it comes to the needs of research labs.

Job Management

I’m part of multiple PI groups; how can I make sure I’m doing my work under a certain group and not a different one?

To change an association for a job, use the command --account=pi_....

How can I check the resource use of my job while it’s running?

To connect to the node where your job is running and start an interactive shell, use the command srun --overlap --pty --jobid X /bin/bash.

Tools like nvitop will only show the GPU(s) assigned to the job you attached to (not all your jobs on that node), while htop -u $USER will show all of your processes’ CPU and memory usage. Use scontrol -d show job X to see which CPU cores your job is using.

Last modified: Thursday, March 13, 2025 at 10:08 AM. See the commit on GitLab.
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