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Documentation

  • Requesting An Account
  • Get Started
    • Quick Start
    • Common Terms
    • HPC Resources
    • Theory of HPC
      • Overview of threads, cores, and sockets in Slurm for HPC workflows
    • Git Guide
  • Connecting to Unity
    • SSH
    • Unity OnDemand
    • Connecting to Desktop VS Code
  • Get Help
    • Frequently Asked Questions
    • How to Ask for Help
    • Troubleshooting
  • Cluster Specifications
    • Node List
    • Partition List
      • Gypsum
    • Storage
    • Node Features (Constraints)
      • NVLink and NVSwitch
    • GPU Summary List
  • Managing Files
    • Command Line Interface (CLI)
    • Disk Quotas
    • FileZilla
    • Globus
    • Scratch: HPC Workspace
    • Unity OnDemand File Browser
  • Submitting Jobs
    • Batch Jobs
      • Array Batch Jobs
      • Large Job Counts
      • Monitor a batch job
    • Helper Scripts
    • Interactive CLI Jobs
    • Unity OnDemand
    • Message Passing Interface (MPI)
    • Slurm cheat sheet
  • Software Management
    • Building Software from Scratch
    • Conda
    • Modules
      • Module Usage
    • Renv
    • Unity OnDemand
      • JupyterLab OnDemand
    • Venv
  • Tools & Software
    • ColabFold
    • R
      • R Parallelization
    • Unity GPUs
  • Datasets
    • AI and ML
      • AlpacaFarm
      • audioset
      • biomed_clip
      • blip_2
      • blip_2
      • coco
      • Code Llama
      • DeepAccident
      • DeepSeek
      • DINO v2
      • epic-kitchens
      • florence
      • gemma
      • gpt
      • gte-Qwen2
      • ibm-granite
      • Idefics2
      • Imagenet 1K
      • inaturalist
      • infly
      • instruct-blip
      • intfloat
      • LAION
      • linq
      • llama
      • Llama2
      • llama3
      • llama4
      • Llava_OneVision
      • Lumina
      • mixtral
      • msmarco
      • natural-questions
      • objaverse
      • openai-whisper
      • pythia
      • qwen
      • R1-1776
      • rag-sequence-nq
      • red-pajama-v2
      • s1-32B
      • satlas_pretrain
      • scalabilityai
      • SlimPajama
      • t5
      • Tulu
      • V2X
      • video-MAE
      • videoMAE-v2
      • vit
      • wildchat
    • Bioinformatics
      • AlphaFold3 Databases
      • BFD/MGnify
      • Big Fantastic Database
      • checkm
      • ColabFoldDB
      • dfam
      • EggNOG
      • EggNOG
      • gmap
      • GMAP-GSNAP database (human genome)
      • GTDB
      • igenomes
      • Kraken2
      • MGnify
      • NCBI BLAST databases
      • NCBI RefSeq database
      • NCBI RefSeq database
      • Parameters of Evolutionary Scale Modeling (ESM) models
      • params
      • PDB70
      • PDB70 for ColabFold
      • PINDER
      • PLINDER
      • Protein Data Bank
      • Protein Data Bank database in mmCIF format
      • Protein Data Bank database in SEQRES records
      • Tara Oceans 18S amplicon
      • Tara Oceans MATOU gene catalog
      • Tara Oceans MGT transcriptomes
      • Uniclust30
      • UniProtKB
      • UniRef100
      • UniRef30
      • UniRef90
      • Updated databases for ColabFold
    • Using HuggingFace Datasets
  1. Unity
  2. Documentation
  3. Datasets
  4. Bioinformatics
  5. MGnify

MGnify

Version: 201812
Path:/datasets/bio/alphafold/mgnify
URL:https://ftp.ebi.ac.uk/pub/databases/metagenomics/peptide_database/2018_12/
Downloaded:2023-02-01
Cite:Lorna Richardson, Ben Allen, Germana Baldi, Martin Beracochea, Maxwell L Bileschi, Tony Burdett, Josephine Burgin, Juan Caballero-Pérez, Guy Cochrane, Lucy J Colwell, Tom Curtis, Alejandra Escobar-Zepeda, Tatiana A Gurbich, Varsha Kale, Anton Korobeynikov, Shriya Raj, Alexander B Rogers, Ekaterina Sakharova, Santiago Sanchez, Darren J Wilkinson, Robert D Finn, MGnify: the microbiome sequence data analysis resource in 2023, Nucleic Acids Research, Volume 51, Issue D1, 6 January 2023, Pages D753–D759, https://doi.org/10.1093/nar/gkac1080
Variant:
    Bibtex:
    @article{Richardson2022,title = {MGnify: the microbiome sequence data analysis resource in 2023},volume = {51},ISSN = {1362-4962},url = {http://dx.doi.org/10.1093/nar/gkac1080},DOI = {10.1093/nar/gkac1080},number = {D1},journal = {Nucleic Acids Research},publisher = {Oxford University Press (OUP)},author = {Richardson,  Lorna and Allen,  Ben and Baldi,  Germana and Beracochea,  Martin and Bileschi,  Maxwell L and Burdett,  Tony and Burgin,  Josephine and Caballero-Pérez,  Juan and Cochrane,  Guy and Colwell,  Lucy J and Curtis,  Tom and Escobar-Zepeda,  Alejandra and Gurbich,  Tatiana A and Kale,  Varsha and Korobeynikov,  Anton and Raj,  Shriya and Rogers,  Alexander B and Sakharova,  Ekaterina and Sanchez,  Santiago and Wilkinson,  Darren J and Finn,  Robert D},year = {2022},month = dec,pages = {D753–D759}}
    
    Last modified: Friday, March 14, 2025 at 12:30 PM. See the commit on GitLab.
    University of Massachusetts Amherst University of Massachusetts Amherst University of Rhode Island University of Rhode Island University of Massachusetts Dartmouth University of Massachusetts Dartmouth University of Massachusetts Lowell University of Massachusetts Lowell University of Massachusetts Boston University of Massachusetts Boston Mount Holyoke College Mount Holyoke College Smith College Smith College
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